Prediction based on both observed (SwissProt annotations) and predicted (by PRED-TMR) transmembrane segments

(in ==> out, out ==> in)

Name	Length	Predicted segments		Observed segments	Segment Matches
*`5HT3_MOUSE`**	`487`	`4`	`247-266,282-303, 307-324, 465-481`	`246-272, 278-296, 306-324, 465-484`	`1`
*`ADT_RICPR`**	`498`	`12`	`28-45, 61-80, 93-112, 148-168, 186-206, 219-235, 279-297, 317-337, 351-370, 378-396, 443-461, 467-482`	`34-54, 68-88, 93-113, 148-168, 185-205, 219-239, 280-300, 321-341, 349-369, 380-400, 439-459, 466-486`	`1`
*`CEK2_CHICK`**	`806`	`2`	`6-23, 369-388`	`365-389`	`0.7`
`CYDA_ECOLI`	`522`	`9`	`20-36, 54-73, 100-118, 127-146, 188-208, 220-238, 392-412, 425-444, 475-494`	`23-42, 95-114, 130-149, 188-207, 220-239, 393-412, 471-490`	`0.8`
`CYDB_ECOLI`	`379`	`8`	`9-24, 80-99, 121-138, 161-181, 206-226, 264-281, 290-311, 342-360`	`9-28, 80-99, 123-142, 165-184, 206-225, 263-282, 293-312, 337-356`	`1`
*`CYOA_ECOLI`**	`315`	`3`	`10-30, 48-67, 90-108`	`51-69, 93-111`	`0.8`
*`CYOB_ECOLI`**	`663`	`15`	`16-35, 59-79, 108-127, 136-156, 194-213, 237-255, 287-305, 310-332, 335-357, 385-403, 423-440, 457-477, 494-514, 591-608, 610-627`	`17-35, 58-76, 102-121, 144-162, 195-213, 232-250, 277-296, 320-339, 348-366, 382-401, 410-429, 457-476, 494-513, 588-607, 614-634`	`1`
*`CYOC_ECOLI`**	`204`	`5`	`26-45, 74-91, 98-115, 142-162, 177-198`	`32-50, 67-85, 102-120, 143-161, 185-203`	`1`
*`CYOD_ECOLI`**	`109`	`3`	`19-37, 45-66, 81-100`	`18-36, 46-64, 81-99`	`1`
`DHG_ECOLI`	`796`	`6`	`11-29, 37-58, 63-81, 87-106, 113-130, 707-727`	`11-37, 41-58, 63-81, 96-110, 119-141`	`0.9`
`DMSC_ECOLI`	`287`	`8`	`10-32, 44-61, 88-107, 117-134, 155-176, 183-201, 223-242, 252-270`	`10-32, 44-66, 88-107, 113-134, 153-176, 183-203, 223-243, 255-281`	`1`
`DSBB_ECOLI`	`176`	`3`	`14-32, 42-63, 145-162`	`15-31, 50-65, 72-89, 145-162`	`0.8`
*`EGFR_HUMAN`**	`1210`	`1`	`650-668`	`646-668`	`1`
`ENVZ_ECOLI`	`450`	`2`	`16-35, 163-179`	`16-35, 162-182`	`1`
*`FCE2_HUMAN`**	`321`	`1`	`24-45`	`22-47`	`1`
`FTSH_ECOLI`	`644`	`2`	`6-22, 102-120`	`5-24, 96-120`	`1`
`FTSL_ECOLI`	`121`	`1`	`38-57`	`38-57`	`1`
*`GLPA_HUMAN`**	`150`	`2`	`6-27, 92-110`	`92-114`	`0.7`
*`GLPC_HUMAN`**	`128`	`1`	`59-81`	`58-81`	`1`
*`GMCR_HUMAN`**	`400`	`1`	`327-346`	`321-346`	`1`
*`HG2A_HUMAN`**	`296`	`1`	`53-72`	`47-72`	`1`
`HISM_SALTY`	`235`	`3`	`27-46, 59-79, 203-221`	`27-47, 59-79, 105-125, 158-178, 200-220`	`0.7`
`HISQ_SALTY`	`228`	`4`	`19-37, 62-80, 93-112, 193-215`	`13-33, 59-79, 88-108, 153-173, 195-215`	`0.8`
`HOXN_ALCEU`	`351`	`6`	`20-42, 89-111, 128-149, 230-247, 278-297, 320-338`	`20-40, 52-72, 95-115, 129-149, 200-220, 244-264, 270-290, 317-337`	`0.8`
*`IL2A_HUMAN`**	`272`	`1`	`241-259`	`241-259`	`1`
*`IL2B_HUMAN`**	`551`	`2`	`12-30, 247-265`	`241-265`	`0.7`
`IMMA_CITFR`	`178`	`3`	`18-35, 106-123, 145-165`	`14-37, 69-89, 107-123, 143-165`	`0.8`
*`ITA5_MOUSE`**	`1053`	`1`	`1003-1021`	`1000-1025`	`1`
`KGTP_ECOLI`	`432`	`11`	`35-53, 66-84, 96-113, 166-183, 195-214, 244-262, 274-295, 312-330, 340-360, 371-389, 405-423`	`26-54, 62-80, 96-116, 120-136, 163-185, 196-214, 244-261, 275-301, 312-330, 337-360, 369-392, 403-423`	`0.9`
*`LACY_ECOLI`**	`417`	`11`	`9-27, 47-66, 76-95, 103-125, 145-164, 167-187, 222-239, 260-283, 291-309, 349-369, 383-400`	`11-33, 47-67, 75-99, 103-125, 145-163, 168-187, 212-234, 260-281, 291-310, 315-334, 347-366, 380-399`	`0.9`
*`LECI_MOUSE`**	`301`	`1`	`59-77`	`59-79`	`1`
`LSPA_ECOLI`	`164`	`4`	`12-31, 69-88, 96-113, 134-153`	`12-22, 70-88, 96-113, 139-153`	`1`
*`MAGL_MOUSE`**	`637`	`1`	`517-533`	`517-536`	`1`
*`MALF_ECOLI`**	`514`	`8`	`19-36, 40-58, 72-91, 277-294, 319-336, 371-392, 429-447, 484-504`	`17-35, 40-58, 73-91, 277-295, 319-337, 371-389, 428-436, 486-504`	`1`
`MALG_ECOLI`	`296`	`6`	`18-37, 91-111, 124-144, 160-177, 205-227, 263-281`	`19-39, 82-102, 124-144, 151-171, 205-225, 260-280`	`1`
`MELB_ECOLI`	`469`	`11`	`16-37, 75-93, 102-119, 146-163, 177-194, 232-251, 263-282, 293-314, 320-340, 377-393, 408-426`	`8-28, 33-53, 76-96, 103-123, 146-166, 172-192, 231-251, 263-283, 293-313, 320-340, 370-390, 408-428`	`1`
`MOTA_ECOLI`	`295`	`3`	`8-28, 165-185, 198-220`	`2-21, 34-51, 171-191, 201-222`	`0.8`
*`MOTB_ECOLI`**	`308`	`1`	`33-49`	`28-49`	`1`
*`MPRD_HUMAN`**	`277`	`1`	`191-209`	`186-210`	`1`
*`MYP0_HUMAN`**	`248`	`2`	`13-33, 156-176`	`154-179`	`0.7`
*`NGFR_HUMAN`**	`427`	`1`	`254-272`	`251-272`	`1`
*`OPPB_SALTY`**	`306`	`6`	`16-37, 103-121, 138-156, 173-190, 229-250, 274-293`	`10-30, 100-121, 138-158, 173-190, 227-250, 272-293`	`1`
*`OPPC_SALTY`**	`302`	`5`	`38-56, 103-121, 149-171, 218-236, 270-289`	`38-59, 103-122, 140-160, 164-180, 216-236, 268-290`	`1`
*`OPS3_DROME`**	`383`	`5`	`64-83, 132-153, 172-191, 219-239, 289-309`	`58-82, 95-119, 134-153, 172-196, 221-248, 285-308, 317-341`	`0.8`
`PHOR_ECOLI`	`431`	`1`	`22-44`	`14-34, 39-59`	`1`
*`PIGR_HUMAN`**	`764`	`1`	`640-661`	`639-661`	`1`
*`SECE_ECOLI`**	`127`	`3`	`19-36, 45-62, 94-111`	`19-36, 45-63, 93-111`	`1`
`SECY_ECOLI`	`443`	`10`	`23-41, 77-98, 122-140, 154-174, 189-207, 217-237, 274-294, 318-337, 369-387, 397-414`	`23-42, 75-95, 122-139, 154-174, 183-203, 217-237, 274-294, 316-335, 376-395, 399-414`	`1`
*`TCB1_RABIT`**	`319`	`1`	`293-311`	`292-313`	`1`
`TOLQ_ECOLI`	`230`	`3`	`19-36, 140-159, 174-192`	`9-36, 127-159, 162-191`	`1`
`TOLR_ECOLI`	`142`	`1`	`24-40`	`16-40`	`1`
*`TRBM_HUMAN`**	`575`	`1`	`517-536`	`516-539`	`1`
*`TRSR_HUMAN`**	`760`	`2`	`71-87, 540-558`	`63-88`	`0.7`
*`VMT2_IAANN`**	`97`	`1`	`26-43`	`25-42`	`1`

Total observed non-transmembrane segments: 214
Correct prediction utilizing as input
(a) transmembrane segments annotated by SwissProt: 97%,
(b) transmembrane segments predicted by PRED-TMR: 86%

23/02/99
Th.L
liakop@biol.uoa.gr