Secondary Structure Prediction

Palaios, G.A. and Hamodrakas, S.J.
Department of Cell Biology and Biophysics,
Faculty of Biology, University of Athens
Panepistimiopolis, Athens 15701, Greece

SecStr is a tool to Predict the Secondary Structure of a protein from its aminoacid sequence alone. The SecStr package uses six different secondary structure prediction methods (Nagano, Garnier et al., Burges et al., Chou and Fasman , Lim and Dufton and Hider). The results of those methods are combined into a Joint Prediction Histogram (JPH) as described by Hamodrakas, 1988 and Hamodrakas et al., 1982.

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Useful links

Biophysics Lab   Sequence Retrieval System    EMBL