TABLE 3: Set of 165 proteins (ROST-Low-Resolution)

Name = Identification of the protein in SwissProt

len = length of the sequence

OTM = number of observed transmembrane segments

PTM = number of predicted transmembrane segments

Observed segments = boundaries of observed segments

Predicted segments = boundaries of predicted segments

Name len OTM PTM Observed segments Predicted segments
1b14_human 361 1 2 309-332 8-25, 306-332
4f2_human 529 1 2 82-104 80-104, 343-361
60im_ecoli 548 6 4 6-23, 343-370, 417-446, 464-481, 494-509, 513-535 346-372, 419-444, 463-479, 497-523
a15_human 244 4 4 12-35, 52-70, 82-107, 209-229 9-43, 53-77, 79-102, 203-232
a2aa_human 450 7 7 34-59, 71-96, 107-129, 150-173, 193-217, 375-399, 407-430 30-61, 70-102, 104-127, 152-170, 201-217, 374-397, 399-426
a4_human 770 1 2 700-723 2-18, 700-718
aa1r_canfa 326 7 7 11-33, 47-69, 81-102, 124-146, 177-201, 236-259, 268-292 3-34, 45-76, 78-103, 124-146, 179-207, 236-256, 263-283
ach1_manse 516 4 4 244-264, 274-294, 306-326, 466-486 247-265, 276-298, 300-325, 465-484
adt2_yeast 318 6 3 27-44, 89-107, 131-148, 192-210, 231-248, 287-305 126-146, 185-211, 223-241
alkb_pseol 401 6 4 21-39, 42-62, 89-111, 114-134, 229-249, 251-270 27-62, 95-129, 228-263, 329-349
atp6_ecoli 271 5 5 39-60, 106-127, 138-159, 205-227, 236-257 41-61, 100-123, 147-166, 211-241, 243-264
atph_odosi 82 2 2 7-33, 51-77 4-27, 57-80
b2ar_human 413 7 6 35-58, 72-95, 107-129, 151-174, 197-220, 275-298, 306-329 31-55, 70-101, 103-121, 152-169, 198-219, 275-292
bach_halss 284 7 7 33-56, 68-91, 109-127, 138-161, 165-189, 198-221, 233-256 33-56, 66-94, 114-140, 142-159, 161-186, 200-231, 234-254
bacs_halss 247 7 7 7-29, 33-58, 72-93, 100-119, 127-148, 157-183, 193-218 2-28, 39-65, 75-99, 102-125, 127-148, 167-181, 183-215
bcs1_yeast 456 1 1 45-68 50-68
bofa_bacsu 87 2 3 3-23, 37-57 3-27, 29-60, 62-86
c561_bovin 252 6 6 17-39, 54-76, 86-108, 124-146, 164-186, 198-220 10-45, 48-67, 89-107, 123-149, 162-180, 199-220
cb21_pea 228 3 2 62-81, 114-134, 182-198 117-134, 182-198
cd37_human 281 4 4 18-38, 60-74, 86-111, 242-266 10-45, 47-79, 81-108, 242-262
cd53_human 219 4 4 12-32, 55-69, 81-106, 182-206 8-44, 47-73, 80-106, 176-204
cd7_human 240 1 2 181-201 2-26, 173-201
cd9_cerae 227 4 4 12-32, 55-75, 87-110, 195-220 11-34, 55-77, 79-110, 194-220
cdsa_ecoli 249 7 7 20-40, 57-77, 85-105, 115-135, 154-174, 177-197, 228-248 20-38, 51-77, 85-102, 114-136, 156-173, 175-198, 231-246
cftr_human 1480 12 11 81-103, 118-138, 195-215, 221-241, 308-328, 331-350, 860-880, 912-932, 991-1011, 1014-1034, 1103-1123, 1129-1149 76-93, 119-150, 200-214, 216-241, 307-340, 855-885, 903-938, 986-1013, 1015-1034, 1101-1123, 1129-1147
cik2_drome 643 6 6 216-234, 267-288, 300-320, 349-367, 384-403, 445-466 216-234, 266-284, 302-316, 383-405, 420-436, 438-466
codb_ecoli 419 12 11 20-39, 52-71, 101-120, 128-147, 153-172, 193-212, 222-242, 258-277, 301-320, 322-341, 359-378, 381-400 19-41, 43-79, 89-126, 128-162, 164-179, 193-210, 223-253, 255-281, 288-305, 307-341, 358-398
cox1_braja 541 12 13 40-60, 87-107, 124-144, 173-193, 211-231, 262-282, 294-314, 332-352, 365-385, 404-424, 441-461, 483-503 41-62, 80-114, 124-138, 150-171, 173-197, 209-240, 262-282, 293-325, 327-352, 354-386, 398-425, 441-455, 479-500
cox2_astpe 229 2 2 27-48, 63-82 25-47, 64-87
cox2_caimo 228 2 2 27-47, 62-81 27-43, 62-80
cox3_synvu 201 4 5 25-45, 65-85, 100-120, 137-157 25-49, 65-82, 105-120, 128-158, 179-198
cp5a_cantr 543 1 1 29-48 29-43
cpt1_rat 773 2 2 48-73, 103-122 53-70, 107-126
crfr_rat 415 7 7 122-142, 152-171, 190-213, 228-249, 269-291, 315-334, 350-369 118-142, 156-172, 193-214, 229-249, 270-291, 317-332, 342-366
cxa1_rat 381 4 4 23-43, 76-96, 155-175, 207-227 19-37, 76-93, 154-178, 207-232
cybh_azoch 240 4 4 31-51, 75-95, 142-163, 196-213 27-55, 65-95, 138-164, 195-213
cyda_ecoli 522 7 9 23-42, 95-114, 130-149, 188-207, 220-239, 393-412, 471-490 12-42, 58-75, 91-118, 131-151, 188-208, 220-238, 383-409, 425-444, 465-494
cydb_ecoli 379 8 8 9-28, 80-99, 123-142, 165-184, 206-225, 263-282, 293-312, 337-356 9-35, 62-99, 121-142, 161-185, 206-226, 259-278, 288-321, 335-360
cyoa_ecoli 315 2 3 51-68, 93-111 10-26, 43-67, 90-108
cyoc_ecoli 204 5 5 32-50, 67-85, 102-120, 143-161, 185-203 26-53, 66-91, 101-118, 138-162, 182-203
cyod_ecoli 109 3 3 18-36, 46-64, 81-99 17-44, 46-66, 80-104
cyoe_ecoli 296 7 9 10-28, 38-56, 79-97, 108-126, 198-216, 229-247, 269-287 12-36, 38-56, 83-97, 99-124, 137-153, 155-175, 204-227, 229-249, 264-295
dcta_rhime 441 12 9 31-49, 69-87, 100-118, 150-168, 172-190, 210-228, 242-260, 282-300, 321-339, 351-369, 379-398, 406-424 19-38, 54-74, 87-109, 141-178, 193-223, 225-257, 307-327, 339-353, 355-385
dcua_ecoli 433 10 11 1-18, 20-37, 54-71, 86-103, 133-147, 229-246, 265-282, 293-310, 333-350, 356-373 2-36, 38-69, 89-110, 137-162, 164-190, 227-244, 259-273, 292-307, 328-355, 357-391, 409-432
dhg_ecoli 796 5 5 11-37, 41-58, 63-81, 96-110, 119-141 15-49, 51-85, 87-101, 103-135, 695-727
dhsc_bacsu 202 5 5 12-31, 60-79, 93-113, 135-155, 178-196 15-31, 52-79, 94-115, 131-165, 181-201
dmsc_ecoli 287 8 8 10-32, 44-66, 90-107, 115-134, 157-174, 183-201, 225-242, 255-280 7-32, 44-67, 87-107, 117-138, 143-171, 173-204, 223-244, 251-286
dsbb_ecoli 176 4 3 15-31, 50-65, 72-89, 145-163 13-38, 40-79, 142-162
ebr_staau 107 4 4 3-20, 30-47, 57-75, 86-103 2-16, 29-46, 57-73, 75-104
edg1_human 381 7 6 47-71, 79-107, 122-140, 160-185, 202-222, 256-277, 294-314 50-68, 79-104, 122-140, 160-191, 201-222, 256-277
egfr_chick 703 1 2 655-667 11-28, 655-677
emr1_human 886 7 6 600-627, 635-656, 667-690, 710-731, 748-776, 795-814, 830-852 594-627, 664-694, 713-729, 749-771, 800-825, 827-843
exbd_ecoli 141 1 1 23-43 22-43
fce2_human 321 1 1 22-47 24-45
fixl_rhime 505 4 3 21-40, 47-67, 71-86, 97-118 23-40, 47-85, 98-115
frdc_myctu 126 3 3 30-50, 64-84, 105-125 27-50, 63-85, 104-125
frdd_myctu 125 3 3 29-49, 64-84, 102-122 17-50, 65-83, 102-124
ftsh_ecoli 644 2 2 5-24, 96-120 5-19, 102-121
ftsl_ecoli 121 1 1 38-57 35-54
fucp_ecoli 438 12 11 25-45, 56-76, 96-115, 119-139, 167-187, 207-227, 266-286, 296-316, 327-347, 353-373, 382-402, 414-434 24-41, 61-85, 92-109, 111-138, 161-178, 208-228, 294-315, 322-351, 353-369, 386-404, 414-429
gaa1_chick 455 4 3 252-273, 279-300, 313-334, 421-441 250-270, 312-332, 423-439
gef_ecoli 50 1 1 6-24 6-24
glpa_pantr 149 1 2 91-113 4-21, 93-111
glpc_human 128 1 1 58-81 56-81
glr1_rat 907 4 5 539-558, 585-603, 614-632, 806-826 2-22, 100-115, 534-557, 614-638, 803-826
gmcr_human 400 1 2 321-346 2-22, 325-346
gp21_rat 1886 1 5 1806-1828 6-26, 485-503, 1119-1142, 1477-1508, 1803-1828
gpbb_human 206 1 2 148-172 4-20, 139-173
gpt_crilo 408 10 10 7-32, 58-79, 95-114, 126-145, 165-184, 195-211, 222-240, 253-269, 275-294, 379-397 2-32, 59-79, 95-114, 131-146, 163-187, 191-208, 225-245, 248-273, 275-291, 381-397
gspk_erwca 328 1 1 8-28 7-27
gspl_pseae 382 1 2 235-252 2-17, 234-252
gspm_pseae 174 1 1 33-52 33-52
gspn_erwca 248 1 1 7-27 6-42
gtr1_bovin 492 12 11 13-33, 67-87, 96-116, 127-147, 156-176, 186-206, 272-292, 307-327, 338-358, 369-389, 402-422, 430-450 12-28, 61-87, 96-116, 121-145, 159-176, 185-208, 306-323, 338-357, 359-392, 401-422, 424-447
hema_meash 617 1 1 35-58 35-60
hema_pi4ha 573 1 3 28-47 28-46, 299-321, 557-572
hg2a_human 296 1 1 47-72 47-65
hisq_salty 228 5 4 13-33, 59-79, 88-108, 153-173, 195-215 2-37, 55-79, 92-110, 190-215
hly4_ecoli 478 1 1 60-80 59-84
hlyb_ecoli 707 8 4 38-51, 58-78, 158-179, 191-211, 269-289, 295-315, 388-408, 412-432 158-175, 191-211, 273-307, 388-425
hupn_braja 381 8 8 40-60, 64-84, 111-131, 150-170, 216-236, 244-264, 293-313, 334-354 35-61, 63-78, 107-135, 142-167, 211-234, 247-267, 291-314, 329-357
ig1r_human 1367 1 2 936-959 10-28, 936-958
il2a_human 272 1 2 241-259 3-19, 239-256
il2b_human 551 1 2 241-265 2-30, 241-265
im17_human 171 3 3 17-37, 63-83, 113-133 17-34, 59-76, 100-133
imma_citfr 178 4 4 14-37, 69-89, 106-123, 143-165 17-37, 72-87, 107-123, 142-168
ita5_mouse 1053 1 1 1000-1025 1000-1025
kch_ecoli 417 6 5 22-41, 64-83, 87-104, 111-127, 141-160, 200-220 21-41, 61-87, 89-127, 136-161, 200-225
kdgl_ecoli 121 3 2 33-48, 52-68, 95-118 35-71, 99-120
kdpd_ecoli 894 4 3 401-423, 428-444, 446-466, 475-498 401-437, 439-466, 470-494
kgtp_ecoli 432 12 11 26-54, 62-80, 96-116, 120-136, 163-185, 196-214, 244-261, 275-301, 312-330, 337-360, 369-392, 403-423 30-58, 62-84, 100-136, 166-183, 195-214, 244-262, 278-302, 312-332, 334-360, 371-389, 399-419
kpm1_ecoli 258 6 6 31-54, 62-81, 109-132, 144-165, 175-195, 227-247 30-59, 63-80, 110-137, 140-165, 174-196, 227-248
lacy_ecoli 417 12 10 11-33, 47-67, 75-99, 103-125, 145-163, 168-188, 218-241, 260-281, 291-310, 315-334, 347-366, 380-399 8-34, 46-66, 75-101, 103-125, 145-165, 167-192, 266-288, 291-310, 349-366, 368-406
lech_human 290 1 1 40-60 40-59
lep3_erwca 279 8 5 17-35, 105-123, 131-149, 164-182, 186-204, 215-233, 237-254, 258-276 10-35, 107-147, 160-199, 215-242, 257-278
lep_ecoli 324 2 2 4-22, 59-77 3-22, 64-82
lha1_rhoca 58 1 1 16-36 16-44
lha3_ectha 49 1 1 15-35 12-37
lhb1_rhoca 48 1 1 22-44 21-47
lhb1_rhopa 46 1 1 19-41 26-45
lhb7_rhoac 54 1 1 21-43 20-43
livh_ecoli 308 8 7 22-42, 46-66, 69-89, 105-125, 155-175, 204-224, 246-266, 281-301 12-41, 43-57, 59-89, 155-175, 201-232, 234-270, 282-296
lspa_ecoli 164 4 4 12-26, 70-88, 96-113, 142-159 8-31, 60-88, 99-117, 137-153
mag_mouse 626 1 2 517-536 2-27, 514-533
malf_ecoli 514 8 7 17-36, 40-58, 67-92, 276-306, 319-336, 370-392, 426-452, 484-505 17-58, 67-92, 276-306, 319-340, 371-392, 419-444, 483-504
malg_ecoli 296 6 6 19-39, 82-102, 124-144, 151-171, 205-225, 260-280 17-42, 76-111, 124-148, 150-175, 205-233, 263-286
melb_ecoli 469 12 11 16-36, 39-59, 77-97, 105-125, 150-170, 183-203, 232-252, 266-286, 296-316, 325-345, 378-398, 407-427 15-50, 74-98, 100-124, 146-163, 172-192, 231-261, 263-283, 293-310, 312-346, 370-394, 402-426
mota_ecoli 295 4 4 2-21, 34-51, 171-191, 201-222 2-25, 27-48, 165-185, 198-224
motb_ecoli 308 1 1 28-49 28-49
mpcp_rat 356 6 3 58-80, 116-135, 156-177, 213-232, 256-278, 309-327 58-74, 261-275, 308-327
mprd_human 277 1 2 186-210 2-21, 185-210
mscl_clope 152 2 2 14-40, 80-101 14-44, 78-101
mtr_ecoli 414 10 10 11-34, 39-61, 87-109, 123-145, 152-174, 189-210, 228-251, 282-303, 322-365, 387-409 2-29, 31-63, 89-114, 125-152, 154-175, 188-207, 228-249, 284-310, 326-367, 386-413
myp0_human 248 1 2 154-179 9-27, 154-179
mypr_human 276 4 4 9-35, 63-87, 151-176, 233-259 2-35, 66-91, 151-180, 232-267
nep_human 749 1 1 28-50 30-49
ngfr_human 427 1 1 251-272 251-272
nikc_ecoli 277 6 5 13-33, 79-99, 121-141, 184-204, 208-228, 240-260 2-34, 72-101, 113-150, 184-220, 239-256
nntm_bovin 1086 14 14 475-493, 501-521, 527-546, 558-578, 596-616, 622-642, 646-666, 672-691, 702-722, 740-760, 778-797, 801-819, 833-853, 857-879 225-246, 478-514, 516-546, 548-577, 596-618, 620-647, 649-666, 672-688, 702-724, 740-761, 778-802, 804-819, 831-857, 859-893
oppb_salty 306 6 6 10-30, 100-121, 138-158, 173-190, 227-250, 272-293 12-32, 94-121, 131-161, 163-190, 227-260, 272-293
ops2_drome 381 7 7 57-81, 94-119, 134-153, 173-196, 221-248, 284-307, 315-339 58-84, 94-122, 124-153, 173-200, 221-250, 284-313, 315-331
pbp3_ecoli 588 1 3 19-39 24-45, 417-433, 540-558
pbpb_ecoli 844 1 1 64-87 64-87
phep_ecoli 458 12 11 28-48, 51-71, 106-126, 133-153, 161-181, 197-217, 251-271, 289-309, 342-362, 368-388, 412-432, 435-455 30-71, 90-126, 128-149, 162-184, 200-230, 249-271, 286-313, 345-363, 365-388, 407-429, 431-452
pigr_human 764 1 2 639-661 2-16, 639-661
pma1_neucr 920 9 9 116-138, 141-160, 292-314, 322-354, 688-713, 721-738, 755-779, 807-847, 854-878 116-134, 138-160, 286-314, 318-354, 688-709, 711-738, 755-779, 814-847, 854-878
ppb_yeast 566 1 1 34-59 38-54
psba_spiol 352 5 7 35-55, 108-128, 140-163, 191-217, 268-288 27-57, 70-96, 108-127, 140-167, 170-185, 191-215, 269-294
psta_ecoli 296 6 5 29-50, 83-102, 127-146, 151-169, 205-223, 267-286 33-57, 76-109, 127-163, 203-230, 264-286
ptgb_ecoli 477 11 10 15-35, 51-71, 80-100, 112-132, 152-172, 191-211, 250-270, 280-300, 310-330, 356-376, 443-463 16-45, 47-80, 82-101, 116-132, 151-179, 185-210, 252-269, 280-299, 301-332, 344-372
ptma_ecoli 637 6 9 25-44, 51-69, 135-154, 166-184, 274-291, 314-333 19-44, 51-66, 77-111, 128-157, 159-177, 213-235, 243-264, 266-300, 303-329
ptnc_ecoli 266 6 7 5-24, 50-69, 84-102, 106-124, 151-170, 182-201 6-21, 38-62, 64-80, 82-114, 138-164, 177-210, 212-239
ptnd_ecoli 286 1 5 262-281 112-130, 132-163, 191-210, 237-258, 261-285
pucc_rhoca 461 12 10 37-56, 63-83, 110-129, 143-163, 183-202, 210-228, 262-281, 303-319, 339-355, 359-376, 395-415, 437-456 39-60, 62-83, 109-131, 139-167, 179-203, 254-285, 302-316, 339-378, 390-417, 419-456
rcel_chrvi 278 5 5 33-56, 90-118, 121-146, 176-205, 231-257 22-58, 79-104, 117-157, 175-197, 230-266
rfbp_salty 476 5 5 15-31, 56-72, 90-106, 115-131, 285-301 15-40, 56-72, 93-107, 112-131, 285-304
rhat_ecoli 344 10 10 6-26, 37-57, 62-82, 97-117, 131-152, 175-195, 209-229, 255-275, 290-310, 322-342 3-26, 37-65, 67-92, 94-123, 133-151, 174-192, 201-234, 254-279, 292-310, 323-343
rib1_rat 605 1 2 438-455 3-20, 436-455
rom1_bovin 351 4 5 20-43, 65-84, 103-125, 265-286 2-16, 19-45, 47-80, 98-127, 263-290
scaa_rat 698 2 3 111-131, 590-610 110-131, 574-606, 680-697
secd_ecoli 615 6 5 10-29, 456-472, 477-497, 502-518, 564-580, 586-605 5-26, 456-480, 482-518, 556-571, 573-601
sece_ecoli 127 3 3 19-36, 45-63, 93-111 19-36, 39-61, 95-125
secf_ecoli 323 6 5 23-43, 143-163, 171-191, 197-217, 249-265, 273-297 24-50, 138-169, 175-209, 249-276, 278-292
secy_ecoli 443 10 10 22-43, 78-98, 122-138, 158-175, 184-205, 215-238, 271-292, 314-336, 372-391, 396-419 23-44, 66-95, 125-141, 143-175, 182-204, 217-237, 271-304, 308-337, 373-388, 397-418
spg1_strsp 448 1 2 423-443 15-34, 422-442
ssrg_rat 185 4 4 28-48, 55-76, 136-157, 164-184 30-53, 55-77, 138-157, 166-181
suis_human 1826 1 3 12-31 10-31, 617-631, 1511-1533
tal6_human 202 4 4 10-30, 50-70, 94-114, 162-182 9-31, 46-70, 93-122, 162-194
tcb1_rabit 319 1 1 292-313 289-314
tcr2_ecoli 401 12 10 7-30, 43-61, 72-91, 99-119, 130-152, 159-178, 212-232, 244-265, 276-295, 299-322, 333-356, 366-387 7-27, 43-62, 78-115, 130-149, 151-179, 206-228, 239-266, 277-318, 336-357, 359-388
thas_human 533 4 3 11-31, 76-96, 224-244, 336-356 11-31, 219-240, 335-350
tok1_yeast 691 8 10 72-92, 138-158, 171-191, 204-224, 247-266, 302-322, 380-400, 436-456 67-93, 135-158, 174-191, 203-230, 248-269, 271-291, 298-326, 384-405, 407-425, 432-461
tola_pseae 347 1 1 17-37 13-39
tolq_ecoli 230 3 3 9-36, 127-159, 162-191 13-36, 127-159, 166-192
tonb_ecoli 239 1 1 1-32 14-30
trbm_human 575 1 4 516-539 2-21, 182-199, 206-224, 507-537
trsr_human 760 1 2 68-88 66-89, 540-558
ucp1_rat 306 6 4 10-31, 73-95, 116-132, 178-194, 212-231, 266-288 12-29, 115-130, 211-229, 262-288
upkb_bovin 259 4 4 15-35, 60-80, 86-106, 229-249 12-30, 54-80, 83-103, 229-254
vatl_ascsu 161 4 4 16-36, 59-79, 99-119, 138-158 11-44, 58-83, 99-120, 133-159
vmt2_iaban 97 1 1 25-42 25-43
vnb_inble 100 1 1 19-40 17-40
vs10_rotbn 175 1 1 30-44 28-46
yd57_metja 343 3 2 8-28, 30-50, 62-82 7-46, 62-82
yro2_yeast 344 7 7 35-55, 63-83, 120-140, 142-162, 173-193, 203-223, 239-259 35-55, 68-84, 117-140, 142-164, 166-186, 203-225, 237-265